I'm not sure whether I agree, things seem to fit together relatively well, even though were not positive on how. Also, Shigeru Miyamoto himself said that they have a kind of master script that tells how each game fits together, their order, ect. However, he also said that they pay little attention to this guide in the making of the actual Zelda games. So there is an order, will they ever release it? Or will the games eventually let us know? I'm not for sure. If you would like to see the article where he said it, I will be happy and try to track it back down, though I couldn't tell you where I read it, I do know that somewhere in my temp files it will give me the record on the site's name.
(Maybe I will post the link here latter)