Hi everyone. I just wanted to jump in here and share a frustration I had with the mobile app. It's definitely buggy like a lot of Pokemon Company apps are.
If your Pokedex isn't updating as you transfer Pokemon in and you are confused, on the launch splash screen, hit the menu/hamburger button in the upper right and then clear cache. It will then probably take forever to start up again, but this works to solve the stupid bug.
Also, for those asking about something special with the starters, they do have their hidden ability that you can only get through different special ways.