I do wonder if there will be an option to control the Wii re-releases with the GameCube Controllers (or Bongo Controllers, in the case of Jungle Beat)....
I suspect they won't mostly because Twilight Princess didn't. Capcom released RE4 with the option to use the classic controller but that makes sense. Why wouldn't Capcom want to provide people with the most controller options? But Capcom has nothing to prove, they just want the game to sell well. Nintendo doesn't just want to sell the game they want to sell the remote concept. They had this big song and dance about how the remote was the new standard in controllers and whether or not that's true (it isn't) they want people to think that.
Zelda didn't have the option for the classic or Gamecube controller even though they already designed controls like that for the Cube version, even though the game was originally designed with controls like that in mind. Why? Because if people could play the Wii version with whatever option they wish they might *gasp* prefer the classic control method or *gasp* it might reveal that the classic controls work BETTER. Uh oh. That kind of ruins the whole "new controller standard" thing.
Now Nintendo has offered control options for some of their Wii games like Mario Kart. But those games were designed from the ground up for the Wii. Nintendo can be confident in the Wii controls because they can choose to design the game however they wish. But these games like TP were designed with Gamecube controllers in mind. If they do not seemlessly transfer to the "new standard" Nintendo looks like chumps. The Wii remote would be a pretty sh!tty controller standard if only games designed for it from the ground up could use it effectively. A true controller standard would seemlessly adapt old control schemes.
Now SSB Brawl is an exception. It doesn't make any real attempt to use the remote and is incredibly flexible with control options. So there is the possibility of Nintendo including the original options. And Zelda was a launch game and these aren't. But just remember they don't just have to sell the game. They're trying to prove the superiority of their "new controller standard". They want these Wii versions to appear to better than the Cube ones and if they have to "hide" the Cube controls because they're better they'll do it.