About the controls from the Gamespot
review:
"The combat controls are more conventional on the GameCube, since you won't be shaking the controller around to attack (though if you've already played the Wii version, expect to feel dumb when you start to shake your WaveBird and wonder why nothing's happening), but the Wii controls actually end up feeling more precise in a direct comparison. It's easier and faster to aim your arrows, boomerang, or other targeted items using the Wii Remote. It's easier to move the camera around with the Wii Remote, too. While the GameCube controller is more precise when it comes to swinging your sword, the easier aiming and spin attack make the Wii version's combat controls superior, even though they have a few issues of their own.
"Also, the spin attack has been changed quite a bit. On the Wii, you execute a spin attack by shaking the Nunchuk controller attachment. After you perform the move, there's a downtime when you can't spin, and the Wii speaker makes a noise to let you know when it's available again. The GameCube version works the opposite way. Instead of being immediately available, you have to charge up the spin attack by holding down B. This is how it's been done in previous Zelda games, so it's not a huge deal, but having the spin attack available at a moment's notice makes it a significantly more useful maneuver on the Wii."