I'm sorry to hear that...*Continues playing SP and chuckles*
They should make it so you use your GBA to give commands and move and such, while the TV is basically all a cutscene. Like lets say you walk into a pokemon center, you hit A to talk to her. On the GBA it shows the normal top down view, but on the TV it shows a fully graphical cutscene of you talking to the lady and you handing her your pokeballs. Now imagine, on your GBA screen during a battle you see your pokemon and the other persons pokemon (it gives you the menu) and you select your command with A. The whole time your doing that the TV will be doing dramatic camera angles and showing each characters face tension and the sort. Then lets say you are attacked by Solar Beam, the TV shows a very beautiful attack, but on your gba screen it says a special command that comes up every once and a while like DODGE, you select dodge and counter attack tackle. The TV then shows another cutscene as your character yells out the commands all while the blast is coming towards your pokemon, then the camera does a very dramatic scene showing your pokemon dodge and tackle. You get the point now.
The whole point is to keep the GC from stopping the action, so you can have all the pausing where you give commands, wait, and such on your GBA but the GC will always be showing nice graphical scenes un-cluttered by menus and game mechanics. And if the New Pokemon was Cel-shaded, it would bring it all together.